PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G31850
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 258aa    MW: 29517.7 Da    PI: 10.3095
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G31850genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.5e-16106185696
                  ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ++s+v ++g   lp kf+e+h  +     + +l+lede+g++++ k+i ++++    l++GW+ F+ +++L++gD +vF+l++   ++ ++++
  Ro03_G31850 106 VKSMVRSHG---LPTKFCEDHlpN----LDSELVLEDEDGNEYDSKYIAKRTG----LSGGWRAFALEHKLDDGDALVFELVEP--TRIKIHI 185
                  566677776...9********433....5569***************655555....***********************9864..3334444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MVAASAYEEA RNKRLEQNKK KFQDLGITEV SKTLSDLTAS EKKPQQRVSR PKPKNTSFEV  60
EPRRSSRQRN PIPSYVDEVD IGLPTRKRLR SKELQENLQS ENPSFVKSMV RSHGLPTKFC  120
EDHLPNLDSE LVLEDEDGNE YDSKYIAKRT GLSGGWRAFA LEHKLDDGDA LVFELVEPTR  180
IKIHIVKVIS REHCKKDKVK SAGKPSKAAK KPKPESDQKQ RSKRATTPEI IDLKTPPELL  240
PESPKSEVVL PYRLRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-39B3 family protein