PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G32363
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 148aa    MW: 17499.2 Da    PI: 9.0655
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G32363genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.35.9e-0949124180
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                  +fY  Y+  v F++rk+k+ k++  +++++r++ C keg+r+ +++k     +   +  ++  +k+ v+  ++ ++ v++
  Ro03_G32363  49 QFYTYYSLVVEFRIRKNKMDKNHAGTRVVRRQLACLKEGQRRASNRK----VKDIDVASVNALCKVSVRTCYEYEYLVNQ 124
                  6*****************************************98877....55555555555556666666666776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MGQPHTIHMK IWMKRRKVEC TKFQGKPFKD LILEDLKDVE FTTINEIDQF YTYYSLVVEF  60
RIRKNKMDKN HAGTRVVRRQ LACLKEGQRR ASNRKVKDID VASVNALCKV SVRTCYEYEY  120
LVNQARDHEF CWICTINCMG ESGNHDGQ