PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G32797
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 262aa    MW: 29247.6 Da    PI: 5.5822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G32797genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12209252452
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                  +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  AveY++
  Ro03_G32797 209 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVEYVS 252
                  799***********************6.....5**************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MINREIEALY HDDMDLERFV DTNGDVTDSE WFYFYTVSLT QSFAAGQNGN SNILGSAYSS  60
GAFIWLAGDD DFQLYECDRV KEARMHEIRT LVCVATSSGV LELASLDVIK EDWSFVQHAK  120
SLFGISDSTS EKGSHEAHVH VPLLQNGLML SAAQKEWTTL GRGMKELAFN IGESSSDLGP  180
SENIENIRSK KRGKSSRHVN GGQQSPSLNH VEAERQRREK LNHRFYALRS VVPNVSKMDK  240
ASLLADAVEY VSRSVSSMLS FL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-31bHLH family protein