PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G32845

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 199aa MW: 23643.2 Da PI: 6.8044

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G32845	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.1	1.4e-26	9	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rF+P e+l+v+yL+ k+eg+ ++ ++ +d+y ePw++ + + ++e+k++yf ++++kk+++g+rk+r++ +g+Wk +k+vl Ro03_G32845 9 VGYRFRPDIEQLLVHYLRSKLEGQAFPQ-GPVHYCDLYGDqEPWQIWEafkeslEKDQERKDLYFITQHKKKTPKGSRKSRTVGTGTWKGDDASKKVL 105 7**********************999.88**9754964345543333355588******************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++++g++k + + ++ + ++ +W+mhey+l Ro03_G32845 106 AASRRVIGTRKRFHYE--NKGSVQNGRWIMHEYEL 138 ********9997..55555789*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MAVHDDPVVG YRFRPDIEQL LVHYLRSKLE GQAFPQGPVH YCDLYGDQEP WQIWEAFKES 60 LEKDQERKDL YFITQHKKKT PKGSRKSRTV GTGTWKGDDA SKKVLAASRR VIGTRKRFHY 120 ENKGSVQNGR WIMHEYELDA SLLRNKHQAK KKNDKSEKNQ KQQEQENQEE DMMSYDYGDQ 180 QDGDHHDQPE FVEEETYMY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36160.1	1e-17	NAC family protein