PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G32847

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 174aa MW: 20694.6 Da PI: 9.5301

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G32847	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.4	8.1e-21	11	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p+GfrF+P++eel+++yL+ k++g++++ ++++++y ePw+ + +++e+ke+yfF+ + kk + + + +r + +g+W+ + k+v+ Ro03_G32847 11 VPVGFRFRPNEEELLCYYLRSKINGERFPN-GLVHNCNVYGDqEPWHVWEaykdPLDQETKELYFFTDQPKKMR-SIKIRR-VGTGTWRGENTGKKVH 105 599**********************999.89*996549742344344477799*999875.455555.688*99999999 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++lvg++ +++ ++ + + +W+mhe +l Ro03_G32847 106 A--SNLVGTR--FMY--KKPGSVQDGRWLMHELEL 134 8..7889987..444..466777899******876 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MAVLMQGDHH VPVGFRFRPN EEELLCYYLR SKINGERFPN GLVHNCNVYG DQEPWHVWEA 60 YKDPLDQETK ELYFFTDQPK KMRSIKIRRV GTGTWRGENT GKKVHASNLV GTRFMYKKPG 120 SVQDGRWLMH ELELDESLIH SKDQVKEKRY VLCILRKIEE KKDRKRSGRD EWGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	6e-15	NAC family protein