PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G32898

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 247aa MW: 29289.9 Da PI: 6.6564

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G32898	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.2	2.5e-26	9	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rF+P e+l+v+yL++k+eg+ ++ ++++d+y ePw++ + + ++e+k++yf ++++kk+++g+r +r++ sg+Wk +k+vl Ro03_G32898 9 VGYRFRPDIEQLLVHYLRPKLEGQAFPK-GPVHNCDLYGNqEPWQIWEafkeslEKDQERKDLYFITQHKKKTPKGSRISRTVGSGTWKGDDASKKVL 105 7**********************999.88**9654964345543333355588********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++++g +k + + ++ + ++ +W+mhey+l Ro03_G32898 106 AASRRVIGKRKRFHYE--NKGSVQNGRWIMHEYEL 138 9******99987..55556789*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MAVHDDPVVG YRFRPDIEQL LVHYLRPKLE GQAFPKGPVH NCDLYGNQEP WQIWEAFKES 60 LEKDQERKDL YFITQHKKKT PKGSRISRTV GSGTWKGDDA SKKVLAASRR VIGKRKRFHY 120 ENKGSVQNGR WIMHEYELDA SLLRNKHQAK KKNDKSEKDQ KLEEQENQEE DMMSCDYGDQ 180 QDGDHHDEPE FVEEETVMTR DNFRKHVLDF EVYLKKLIAE QAMKKNDHKD SQKMILEELE 240 RHMMSDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	155	KRKRFHYENKGSVQNGRWIMHEYELDASLLRNKHQAKKKNDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36160.1	2e-18	NAC family protein