PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G33008

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LSD

Protein Properties

Length: 161aa MW: 17383.3 Da PI: 8.0784

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G33008	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.3	1e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Ro03_G33008 7 CSGCRSILLYPRGASNVCCALCNII 31 **********************976 PP
2	zf-LSD1	34.5	3.4e-11	58	77	6	25
zf-LSD1 6 tlLsYPrGApsVRCalCdtV 25 tlL+ +rGA+sVRC++C+tV Ro03_G33008 58 TLLMHTRGATSVRCSCCHTV 77 8******************9 PP
3	zf-LSD1	51.5	1.7e-16	90	114	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V Ro03_G33008 90 CGNCRTTLMYPYGAPSVKCAVCQFV 114 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MQSQLVCSGC RSILLYPRGA SNVCCALCNI ITPAPPPVRP LAAVLQNAEH PESNLVETLL 60 MHTRGATSVR CSCCHTVNLA PANQVSHINC GNCRTTLMYP YGAPSVKCAV CQFVTNVGSM 120 PHSQSQTVVV ENPMSVDESG KLMFIIYNIC ARNYVNVRCP I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	8e-48	LSD family protein