PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G33013

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 591aa MW: 66859.5 Da PI: 6.8938

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G33013	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.3	1.5e-24	98	206	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkekdgkwevtk 80 +fY+eYA+++GF ++++s++s+ +g++++++f C+++g++ e++++ ++ r +r+ ++t+Cka+++vk+++dg+w v + Ro03_G33013 98 SFYKEYANSMGFAAVIKASRRSRVSGKFIDAKFACTRYGNKPETSTAdtaepvsnsrefsiclkrKRGGRASRSLEKTDCKACMHVKRRQDGRWTVCS 195 5*************************************99999889**********988788899*********************** PP FAR1 81 leleHnHelap 91 + eHnH+++p Ro03_G33013 196 IIREHNHDIFP 206 *****9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MGIDLEQPSG ESHKTDNGPS GNINIVDGRE EDASGDQASI SVTNVPVNYK ENTGKNVNGS 60 VANSKNRVDA RDEINLNSPK DLELHDGMEF ESKEEAFSFY KEYANSMGFA AVIKASRRSR 120 VSGKFIDAKF ACTRYGNKPE TSTADTAEPV SNSREFSICL KRKRGGRASR SLEKTDCKAC 180 MHVKRRQDGR WTVCSIIREH NHDIFPDEAY YFRGHRKLDL GSASGNVVGL HAIRRRTKNM 240 FVDMSRQSGG YKKSEFFEQY NTILREKYEE EAKADFETWH KQPALKSPSP FGKQMATMYT 300 HAIFKKFQVE VLGVVACHPK KEAEDGAIKT FRVQDFEENQ HFIVEWNEMT SDISCLCHSF 360 EFHGSLSQES YNIAFNALEE ALRSCENINN SIQSVIEPVS PETHDPHGFE GMNQGITTNK 420 TNKKNSTCKK GQVHSEPEVL TIEMQDSWQG MTWDTQIQEH QPLIVLMNHK REQLSSRAPT 480 LDGYFGPQQI VQGMGQLNTI ASRRDDYYSN QHMQGLGQLN SIAPIHDAQY ITQQRLHGMG 540 QLHFRPQTIP SCFEIENDLQ DMDQSTVGRT QIHGLASKHL QSKHLSRGGE K

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MGIDLEQPSG ESHKTDNGPS GNINIVDGRE EDASGDQASI SVTNVPVNYK ENTGKNVNGS  60
VANSKNRVDA RDEINLNSPK DLELHDGMEF ESKEEAFSFY KEYANSMGFA AVIKASRRSR  120
VSGKFIDAKF ACTRYGNKPE TSTADTAEPV SNSREFSICL KRKRGGRASR SLEKTDCKAC  180
MHVKRRQDGR WTVCSIIREH NHDIFPDEAY YFRGHRKLDL GSASGNVVGL HAIRRRTKNM  240
FVDMSRQSGG YKKSEFFEQY NTILREKYEE EAKADFETWH KQPALKSPSP FGKQMATMYT  300
HAIFKKFQVE VLGVVACHPK KEAEDGAIKT FRVQDFEENQ HFIVEWNEMT SDISCLCHSF  360
EFHGSLSQES YNIAFNALEE ALRSCENINN SIQSVIEPVS PETHDPHGFE GMNQGITTNK  420
TNKKNSTCKK GQVHSEPEVL TIEMQDSWQG MTWDTQIQEH QPLIVLMNHK REQLSSRAPT  480
LDGYFGPQQI VQGMGQLNTI ASRRDDYYSN QHMQGLGQLN SIAPIHDAQY ITQQRLHGMG  540
QLHFRPQTIP SCFEIENDLQ DMDQSTVGRT QIHGLASKHL QSKHLSRGGE K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	2e-44	FAR1 family protein