PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G33037
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARF
Protein Properties Length: 867aa    MW: 96288 Da    PI: 6.2381
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G33037genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.2e-24187288199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Ro03_G33037 187 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 280
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Ro03_G33037 281 LLLGIRRA 288
                  9****997 PP
2Auxin_resp118.45.6e-39313396183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaast+s F+++YnPras+seFv++++k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Ro03_G33037 313 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 396
                  79*********************************956689****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    
MRLSSAGFSP QPQEVVRFRI WGVDRFDLAE NLDDRTGSGL IWLYLLNFCL FFYLGFCDQV  60
VFFMGIHIAE LNFAGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  120
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDG YLPAGLGSPN  180
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  240
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  300
SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT CISVGMRFRM  360
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  420
TFPMYPSPFP LRLKRPWPPG LPSFNGMRDD DLSMNSPLMW LRGDNGDRGI QSLNYHGIGV  480
TPWMQPRLDA SMIGMQTDMY QAMAAAALQE MRVVDPSKSL PTSLLQFQQT QNIPSRSAAL  540
MQPQMSFSDS NGNPATSTIL SPLHSLMGSF QQDESSNLLN LPRTNPLISS SGWPSKRAAI  600
EPLLSSGVSQ CVLPQVEHLG PPQTTISQNP ISLPPFPGRE CSIDQEGSTD PQTHLLFGIN  660
IESSPLLMQN GMSNLRGVGS DSDSTTIHFP SNYMSTTGTD FSLNPAVTPS SCIDESGFLQ  720
SPENVGHGNS LNGNFVKVYK SGSFGRSLDI TKFSSYHELR SELARMFGLE GELEDPVRSG  780
WQLVFVDREN DVLLLGDDPW PEFVNSVWCI KILSPQEVQQ MGKRGLELLK SVPMQRLSSN  840
SCDDYGGSRQ DSRNLSSGIT SVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein