PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G33058

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 369aa MW: 41949.4 Da PI: 10.6682

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G33058	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	28.7	4.2e-09	230	284	36	66
TCP 36 qdeLGfdkdsktieWLlqqakpaikeltgt........................s 66 d+LG+d+ sk+i+WL+ +ak+ai + ++ + Ro03_G33058 230 KDRLGYDRLSKAIDWLIDKAKAAIEAVDDSyatyhkkanfmkmgwlksmmalnyN 284 69************************99997665555544444444444333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MWLIFSLIPA AYASDKGILK IADLELGRSF TVPLKRYMHE ISILWYKAPA VLLSSTPYSI 60 DVDMWSVRAD KGDSIKASYL HHLSKLNGGA IVGEVVRKFS TNENTLTVGG SYVVDPHTTF 120 KARLNNHINL RALLQYQLSP KNIFTLSGSL HNKTLHKNSK RALTDAEEAI KLNPTNLKLV 180 SIFHGALMKM KLKINQKMLK KNNNGRYGRI VKVQGGHIVR SIVRKDRHNK DRLGYDRLSK 240 AIDWLIDKAK AAIEAVDDSY ATYHKKANFM KMGWLKSMMA LNYNAGDGGE DSHLSTSSIP 300 SKPDQFLSYP INDVNRIWSR QILTKQEIVH EQQQTESAKR ISISRPTWSR RPSHSTEPWT 360 PPFRSRTRL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MWLIFSLIPA AYASDKGILK IADLELGRSF TVPLKRYMHE ISILWYKAPA VLLSSTPYSI  60
DVDMWSVRAD KGDSIKASYL HHLSKLNGGA IVGEVVRKFS TNENTLTVGG SYVVDPHTTF  120
KARLNNHINL RALLQYQLSP KNIFTLSGSL HNKTLHKNSK RALTDAEEAI KLNPTNLKLV  180
SIFHGALMKM KLKINQKMLK KNNNGRYGRI VKVQGGHIVR SIVRKDRHNK DRLGYDRLSK  240
AIDWLIDKAK AAIEAVDDSY ATYHKKANFM KMGWLKSMMA LNYNAGDGGE DSHLSTSSIP  300
SKPDQFLSYP INDVNRIWSR QILTKQEIVH EQQQTESAKR ISISRPTWSR RPSHSTEPWT  360
PPFRSRTRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	5e-15	TCP family protein