PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G33114

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 216aa MW: 24637.6 Da PI: 8.0274

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G33114	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137	5.5e-43	135	212	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq++gC+adls+ak y+rrhkvC++hskap+vlv gl+qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk+++ Ro03_G33114 135 CCQAPGCNADLSDAKPYYRRHKVCDFHSKAPAVLVGGLQQRFCQQCSRFHDLSEFDENKRSCRRRLAGHNERRRKSSN 212 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MKTREHMELV VLTHNSLFLL LFHLVVSQGF SFNSVGSLTS ILHTSFSYLL LLPPLFFCKM 60 ETDKAQGKRR LNYKIEEEEE EGEEEDNDEE DHSSRPSVLV HGEDDRRKRV TMMNSTSTSS 120 KKGSGAGGST TTRPCCQAPG CNADLSDAKP YYRRHKVCDF HSKAPAVLVG GLQQRFCQQC 180 SRFHDLSEFD ENKRSCRRRL AGHNERRRKS SNDYPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-39	SBP family protein