PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00037

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 413aa MW: 45372.9 Da PI: 7.2329

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00037	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Ro04_G00037 14 KGPWTPEEDQKLLSYIQEYGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53	8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l Ro04_G00037 67 RGKFSLQEEQTIIQLHALLGNR-WSAIANHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLSYIQ EYGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIANHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVTHKPKH HDAYGSGSGH AKDAANLSHM AQWESARLEA EARLVRESKQ LIMTTNNNHP 180 LQLQLQHHHQ LVNINPSTQT HGVVMTKAAA ATSSLPCLDV LKAWQGAWSS KPIIRDNCSS 240 NTIVSGMNMM MAMDDLESPT STLNFPAAYN ATYPMQSLNG KQLPQFKEEL DNTMVLQEIH 300 AYNGCTDEST TTHAWFAEDG LIRSNGGNDG SSNVILPAAA AALSNIMEGF CGTADMLVYN 360 SDEQNIAAGE ISDNGGGGDG SCGRSGSNVE ENRSYWDSIL NLVNASPSGS PVF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLSYIQ EYGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIANHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKH HDAYGSGSGH AKDAANLSHM AQWESARLEA EARLVRESKQ LIMTTNNNHP  180
LQLQLQHHHQ LVNINPSTQT HGVVMTKAAA ATSSLPCLDV LKAWQGAWSS KPIIRDNCSS  240
NTIVSGMNMM MAMDDLESPT STLNFPAAYN ATYPMQSLNG KQLPQFKEEL DNTMVLQEIH  300
AYNGCTDEST TTHAWFAEDG LIRSNGGNDG SSNVILPAAA AALSNIMEGF CGTADMLVYN  360
SDEQNIAAGE ISDNGGGGDG SCGRSGSNVE ENRSYWDSIL NLVNASPSGS PVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-104	MYB family protein