PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00097

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 481aa MW: 54311.6 Da PI: 7.1299

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00097	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.5e-14	24	68	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT++Ed+ l d + +G+++W+ Ia++++ +t qc+ rw++yl Ro04_G00097 24 TWTQQEDDTLRDQISIHGTENWAIIASKFN-DKTTRQCRRRWYTYL 68 6***************************.***********97 PP
2	Myb_DNA-binding	43.6	6.7e-14	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + Ro04_G00097 74 KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 117 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MQEIKRKIGN EYSDSKKKER HIVTWTQQED DTLRDQISIH GTENWAIIAS KFNDKTTRQC 60 RRRWYTYLNS DFKKGGWSPE EDMLLCEAQK IFGNRWTEIA KVVSGRTDNA VKNRFSTLCK 120 KRAKYEALAK ENATSYINPN DKRVIIRNGF SADGTSENTS PLKKMRRTHI PSLSENCNYG 180 DRRHGQCGKT NQQLRAPFTV LIQNIHNVDN LQDRHNVNST KEVPRNAQTN KFEGSFLKKD 240 DPKITALMKQ AELLSSLAMK VNTDNTDQSL ENAWKVLQDF LNQSKESDIL SYGMSDFDFQ 300 LEDLKYLLED IRSTSEGGRP SWRQPDLYDE SPGSSEYSTG STLLSQTECY KMEQNEPEIG 360 TINQEFSPES QSLHIGGQNN VGELEKGIVS SGTKKQEILP SCDEGTNNDA VVSALSSTEF 420 SSPIQVTPMF RSLAAGIPSP KFSESERSFL LKTLGADSPF PISSTNPSQP PPCKRALLQS 480 L

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MQEIKRKIGN EYSDSKKKER HIVTWTQQED DTLRDQISIH GTENWAIIAS KFNDKTTRQC  60
RRRWYTYLNS DFKKGGWSPE EDMLLCEAQK IFGNRWTEIA KVVSGRTDNA VKNRFSTLCK  120
KRAKYEALAK ENATSYINPN DKRVIIRNGF SADGTSENTS PLKKMRRTHI PSLSENCNYG  180
DRRHGQCGKT NQQLRAPFTV LIQNIHNVDN LQDRHNVNST KEVPRNAQTN KFEGSFLKKD  240
DPKITALMKQ AELLSSLAMK VNTDNTDQSL ENAWKVLQDF LNQSKESDIL SYGMSDFDFQ  300
LEDLKYLLED IRSTSEGGRP SWRQPDLYDE SPGSSEYSTG STLLSQTECY KMEQNEPEIG  360
TINQEFSPES QSLHIGGQNN VGELEKGIVS SGTKKQEILP SCDEGTNNDA VVSALSSTEF  420
SSPIQVTPMF RSLAAGIPSP KFSESERSFL LKTLGADSPF PISSTNPSQP PPCKRALLQS  480
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	0.0	MYB family protein