PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00112
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Whirly
Protein Properties Length: 271aa    MW: 29972.9 Da    PI: 9.8372
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00112genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly104.41e-3295168174
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesc 74 
                  s+yk+kaal+v++++p+f+aldsg++kl+r+G++ll++a+a+++r ydW++kq+f+ls+te++++v+l++kesc
  Ro04_G00112  95 SIYKGKAALTVEPKAPEFTALDSGAFKLSREGFVLLQFAPAAGVRIYDWSRKQVFSLSVTEIGSIVSLGAKESC 168
                  7************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MLKLHSLSSP VAVQNPNHSL SSQFSSKARV FSANSFGFSP NSSSSRKRLS LKCRQSEYFE  60
QQRLNRPTSP NNSSSATQSP AGASAVPARF YVGHSIYKGK AALTVEPKAP EFTALDSGAF  120
KLSREGFVLL QFAPAAGVRI YDWSRKQVFS LSVTEIGSIV SLGAKESCVQ NKLINLDENI  180
YIPVTRAEFA VLNSAFNFIL PYLLGWHAYA NSVKPDDMSR VNNATPRYGG DFEWSRLKNE  240
EADLDSTRPS VFPSCVVNAK SHFHHIICFF F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.12e-92Whirly family protein