PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00156

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 212aa MW: 24201.2 Da PI: 7.2914

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00156	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	13	41	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+W+++Ed++l+d+++++G g W+t ++ Ro04_G00156 13 KGAWSKQEDDKLIDYIRKHGEGYWRTLPQ 41 79**********************99876 PP
2	Myb_DNA-binding	52.5	1.2e-16	47	92	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Ro04_G00156 47 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 92 8999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MRKPCCDKQD TNKGAWSKQE DDKLIDYIRK HGEGYWRTLP QAADLKRGNF AEDEEDLIIK 60 LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HLRRKLMNMG IDPNNHRPTN AAILPRPQNH 120 PPQMLKTRAG TFNHEPVEIE SKSPRGDDQN NCEQVSDGRS CLEDDSSCGG HLLPDLNLDL 180 TVHLSCKEPT HHLYLTNKSE IFASSTTLPL FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	4e-58	MYB family protein