PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00171
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 196aa    MW: 22098.1 Da    PI: 9.272
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-1958112256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Lee F+++++++ +++e LA +l+L  rqV vWFqNrRa+ k
  Ro04_G00171  58 RKKLRLTKEQSRLLEESFRQHHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 112
                  78889************************************************98 PP
2HD-ZIP_I/II118.53.7e-3858146189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Ro04_G00171  58 RKKLRLTKEQSRLLEESFRQHHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 146
                  69*************************************************************************************94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MASLELTMSV PGFSSYPSLP SSVKDLDINQ VPSGQGADQE EILEDEEDSS NGSGGPPRKK  60
LRLTKEQSRL LEESFRQHHT LNPRQKEALA LQLKLRPRQV EVWFQNRRAR SKLKQTEMEC  120
EYLKRWFGSL TEQNRRLQRE VEELRAMKVG PPTVISPHTS EPLPASTLTM CPRCERVTTT  180
ANGKTAVSTK VATPAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-79HD-ZIP family protein