PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00211

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

YABBY

Protein Properties

Length: 233aa MW: 26652.1 Da PI: 6.5026

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	213.2	8.8e-66	6	179	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshlde..slkeelleelkveeenlksnvekeesas 93 ++f+ +eq+CyvqC+fC til+vsvP +sl+++vtvrCGhC+ llsvnl+kas +ll++ + d+ + k+e + ++ve++ +++ + ++ + Ro04_G00211 6 HLFDLPEQICYVQCGFCATILLVSVPCSSLSMLVTVRCGHCSCLLSVNLMKASflpfHLLTSLGQDDQglQQKDEEVCAEEVEKQRYQMLDDMRGPYM 103 7899*********************************************99999988998776333113333444455666677777777777666 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +++ +e+ ++ ++ + v++PPekrqr+Psaynrfikeeiqr+ka nP ++h+eafs+aaknWa fP++ ++ Ro04_G00211 104 VVSTNSDNEEEYTNTITMNHIVNKPPEKRQRAPSAYNRFIKEEIQRLKAVNPRMTHKEAFSTAAKNWAQFPPVQYK 179 666665556666666666667*************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MSTPNHLFDL PEQICYVQCG FCATILLVSV PCSSLSMLVT VRCGHCSCLL SVNLMKASFL 60 PFHLLTSLGQ DDQGLQQKDE EVCAEEVEKQ RYQMLDDMRG PYMVVSTNSD NEEEYTNTIT 120 MNHIVNKPPE KRQRAPSAYN RFIKEEIQRL KAVNPRMTHK EAFSTAAKNW AQFPPVQYKI 180 DGPDHGESSS QLNREDQKVA WDSGVNHQVQ EDSKEFRGRK APRHSIWART PFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-75	YABBY family protein