PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00228

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 341aa MW: 37452.9 Da PI: 6.8548

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00228	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Ro04_G00228 168 FSCNYCKRKFFSSQALGGHQNAH 190 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MSETPNVSRA VGDSKSPNSI QQKMSGVNHT LHISQKVECE NAKDPGDFSP QATVILASYL 60 KDMVEYSHKQ VLDFNMITVP NLNLESANDN SETTSQVTSN NIAQQEESPD PSKDSTTTSC 120 LTNQTNLPQN RGPVSLNLTL QFSSNDLELK GMAGETSNET EAATPRVFSC NYCKRKFFSS 180 QALGGHQNAH KRERTMAKRA LRMGMFPDHR YTSLASLPLH GSAASAFRSL GIEAHAAMHQ 240 NIFVQSDQRL PVPDTRGVAR FQQQGYYGVP MPMPPMPMFM EDDDVGVFWP GSFRQVGEGM 300 RGHFNVDQPA QISQMINSGR TMPPKSSTSS SSSSPDLTLK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-37	C2H2 family protein