PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00394
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 328aa    MW: 35486.8 Da    PI: 9.8715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00394genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.2e-13108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
      Ro04_G00394 108 AWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 152
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MSRTCSQCGN NGHNSRTCTE AAGGGAAASA ENGIMLFGVR LVTEQGNAFR KSASMTNLSQ  60
YEQLPLQDSN PDAGYASDDV VHASGNRRER KRERGAQAVL VGFAEGVAWT EEEHRLFLLG  120
LQKVGKGDWR GISRNFVKTR TPTQVASHAQ KYFLRRSNHN RRRRRSSLFD ITTDTPLMNS  180
LMEEDLGLHQ ETAQLSLPVL PYPPQPQSSN NGGFLVSNFA MSMSPAVLPV TGESSSAESL  240
ALLGGGPRSP KQQAKKLIRP IPVHPIPPSA KMADLNLNKY SPTRVHEPLP LSLKLSTTTS  300
SEEQSPTSTH SSTFQAMSSG SDSIISVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.24e-68MYB_related family protein