PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00433
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24561.2 Da    PI: 6.9157
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00433genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.34.8e-241562249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 + en+sn+qvtfskRr+gi+KKA EL vLC+a+vavi+fss +k++ y
  Ro04_G00433 15 QLENSSNKQVTFSKRRAGIFKKAGELTVLCGADVAVIVFSSADKVFCY 62
                 679****************************************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSKKTQGRKK VEIKQLENSS NKQVTFSKRR AGIFKKAGEL TVLCGADVAV IVFSSADKVF  60
CYGHPNINAV LDSYQNGLSS VVKVGDNASD VPVAEFNKEY VEAEKEFEGL KRKTTEMKEM  120
ADEKKKIMKE MNVSDGFWWD EVVDLGMMDE REAEQYLRAL EEVRQKVAAR VHELKILNGT  180
MTGPPVPAVH QLCHVPFMTA NNCFGTVSSC TIEFDVKQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-31M-type_MADS family protein