PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00457

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 503aa MW: 55152.7 Da PI: 7.1126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00457	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	395	429	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++ L++++ + +K + a++L +A++YIk+Lq Ro04_G00457 395 VADRITALQQIVSPF-----GKTDTASVLYEAIQYIKYLQ 429 568899999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MADQCRVDST GNCVAISSST QPNWWDHGHL HAAAAASGAG SHLSASAWPW HRQQKQQQAN 60 PNYSNSSCDE DVSMSSTSFT NASNHSSLSV DSSRRLVDQR SASSNDDMNN IGEQVSDIQI 120 WTQALLSVGN NDLNNNMSHD VGENFLDALS SKSLSNTAMY APACDYLKKL DNVNSNWEFT 180 NSSSATDAMH ASNLNNFERQ ININGSFSSD NLPNLVGTWS IAPPEPQVVN SPFFNLPQVS 240 CHGAHNNLQG NNNIEYQIGL NNAMAADNNF YGSGNGLMIP DSYSSSNSAR NFADVISFNS 300 RLGKPLMDHI HHAPKPSNFK SLINLSDTTS KKQGLQTTSQ TRMSGRGQGT ANELGKKKRT 360 EESTTSSETV LKKPKQETST VNSSSVKIQA PKVKVADRIT ALQQIVSPFG KTDTASVLYE 420 AIQYIKYLQD QVHVLLSSPY LKTNPHKDPW GKFDHIINGD HQAKMDLKSR GLCLVPTSCT 480 PQVYRENTGS DYWTPTYRGC LYR

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MADQCRVDST GNCVAISSST QPNWWDHGHL HAAAAASGAG SHLSASAWPW HRQQKQQQAN  60
PNYSNSSCDE DVSMSSTSFT NASNHSSLSV DSSRRLVDQR SASSNDDMNN IGEQVSDIQI  120
WTQALLSVGN NDLNNNMSHD VGENFLDALS SKSLSNTAMY APACDYLKKL DNVNSNWEFT  180
NSSSATDAMH ASNLNNFERQ ININGSFSSD NLPNLVGTWS IAPPEPQVVN SPFFNLPQVS  240
CHGAHNNLQG NNNIEYQIGL NNAMAADNNF YGSGNGLMIP DSYSSSNSAR NFADVISFNS  300
RLGKPLMDHI HHAPKPSNFK SLINLSDTTS KKQGLQTTSQ TRMSGRGQGT ANELGKKKRT  360
EESTTSSETV LKKPKQETST VNSSSVKIQA PKVKVADRIT ALQQIVSPFG KTDTASVLYE  420
AIQYIKYLQD QVHVLLSSPY LKTNPHKDPW GKFDHIINGD HQAKMDLKSR GLCLVPTSCT  480
PQVYRENTGS DYWTPTYRGC LYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-52	bHLH family protein