PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02566

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 606aa MW: 65208.1 Da PI: 5.2769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02566	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.7e-09	410	458	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Ro04_G02566 410 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 458 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MGIFLLPLLV VGSLSLNSRA GFTATLTRVL NGGREEMDMS EKDEFELENR NEDPMNYSPA 60 MTYGFGGSNL TNASMGLVPI GNSMADSKGD LIGSSSQPSA SMVDTFGQVL WDHPTNSQNL 120 GFCDINGQTS ASTSNTTGIR KGIPSSLRSG IDRPLDMCWN PPNSMLKGGI FLPNGPAGML 180 PQSLSQFPAD SGFIERAARF SCFSGGNFHD MMNPFVVPES MSLYSKGGGM MHWAQEVVAG 240 QGPKAMSSNE LNQVGDASNE VSLPMEHGAT DGSPLKNEKK SESLVKSHDE AKNIMDGSGN 300 ESDEADFSGG AGIGQEEPSM MEGTGVGPSK GSKKRKRSGQ ANEIDQTKIS AQQPGESTKD 360 DTEIVQKGDQ HPASTTNKTT GKHGKQGSQT SDPVKEEYIH VRARRGQATN SHSLAERVRR 420 EKISERMKFL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEVWKTIYFS PKVEFLSMKL 480 ATVNPRLDLN IESLLEKDIL QSRVGPSSTM GFSPDMHIAY PPLHPSQSGL IQAGLPGMGS 540 SSDLLRRAMG SQMTPMTGGF KEPSQLPNVW EDELQNVFQM SYGTGTPSNS QDVDGSGTPG 600 HMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MGIFLLPLLV VGSLSLNSRA GFTATLTRVL NGGREEMDMS EKDEFELENR NEDPMNYSPA  60
MTYGFGGSNL TNASMGLVPI GNSMADSKGD LIGSSSQPSA SMVDTFGQVL WDHPTNSQNL  120
GFCDINGQTS ASTSNTTGIR KGIPSSLRSG IDRPLDMCWN PPNSMLKGGI FLPNGPAGML  180
PQSLSQFPAD SGFIERAARF SCFSGGNFHD MMNPFVVPES MSLYSKGGGM MHWAQEVVAG  240
QGPKAMSSNE LNQVGDASNE VSLPMEHGAT DGSPLKNEKK SESLVKSHDE AKNIMDGSGN  300
ESDEADFSGG AGIGQEEPSM MEGTGVGPSK GSKKRKRSGQ ANEIDQTKIS AQQPGESTKD  360
DTEIVQKGDQ HPASTTNKTT GKHGKQGSQT SDPVKEEYIH VRARRGQATN SHSLAERVRR  420
EKISERMKFL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEVWKTIYFS PKVEFLSMKL  480
ATVNPRLDLN IESLLEKDIL QSRVGPSSTM GFSPDMHIAY PPLHPSQSGL IQAGLPGMGS  540
SSDLLRRAMG SQMTPMTGGF KEPSQLPNVW EDELQNVFQM SYGTGTPSNS QDVDGSGTPG  600
HMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	338	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-126	bHLH family protein