PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02625

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 474aa MW: 52969.2 Da PI: 9.6866

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02625	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	147.1	1.2e-45	115	259	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg. 88 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k aikel + + s++ +e+++ +s++ Ro04_G02625 115 SGKKDRHSKICTAQGPRDRRMRLSLQVARKFFDLQDMLGFDKASKTIDWLFTKSKSAIKELKQHlilprtigtaKYSTS--TESGEVVSKTM----Mt 206 58************************************************************999997754422222..22222222222....02 PP TCP 89 .....kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 +++ ++++k+ + + +ak sr +arararertrekmri+++ Ro04_G02625 207 hcaveGESSIGGMARDPKKNMRNLRMVAKGSRDEARARARERTREKMRIRSSC 259 23343444444455556666666788899******************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MYPPLSSNTT TTTNDENPGT NSSSQPHHHP HNYDYNSPFL EDHDGVILSY LLSQQQFPMV 60 DSGGADATSN LSQHQAAQSS AEISVAASNQ ALMEEKILIS SKKKKKAAAP RKRTSGKKDR 120 HSKICTAQGP RDRRMRLSLQ VARKFFDLQD MLGFDKASKT IDWLFTKSKS AIKELKQHLI 180 LPRTIGTAKY STSTESGEVV SKTMMTHCAV EGESSIGGMA RDPKKNMRNL RMVAKGSRDE 240 ARARARERTR EKMRIRSSCQ TTHDEENPND LGLCLGEESK KPTNPTNPQL FEQGGTNSMM 300 INNTNDHKTL IGRSISASRN RPNFEEDGEF TGFTGNWGNI NSTKMQSFCH TMTANVIKSF 360 TGNNVLQVEN PSSPIMGTTT SHYTKQQEPS RTATSLFSYT SSNSQEQNYS VSENLSEYNA 420 IAIVMFRQSI KVPFPFGLRT YTSLGLHIVI FKMNQLSKVL NQHEHQETQS SQDY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MYPPLSSNTT TTTNDENPGT NSSSQPHHHP HNYDYNSPFL EDHDGVILSY LLSQQQFPMV  60
DSGGADATSN LSQHQAAQSS AEISVAASNQ ALMEEKILIS SKKKKKAAAP RKRTSGKKDR  120
HSKICTAQGP RDRRMRLSLQ VARKFFDLQD MLGFDKASKT IDWLFTKSKS AIKELKQHLI  180
LPRTIGTAKY STSTESGEVV SKTMMTHCAV EGESSIGGMA RDPKKNMRNL RMVAKGSRDE  240
ARARARERTR EKMRIRSSCQ TTHDEENPND LGLCLGEESK KPTNPTNPQL FEQGGTNSMM  300
INNTNDHKTL IGRSISASRN RPNFEEDGEF TGFTGNWGNI NSTKMQSFCH TMTANVIKSF  360
TGNNVLQVEN PSSPIMGTTT SHYTKQQEPS RTATSLFSYT SSNSQEQNYS VSENLSEYNA  420
IAIVMFRQSI KVPFPFGLRT YTSLGLHIVI FKMNQLSKVL NQHEHQETQS SQDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	9e-34	TCP family protein