PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02627
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 352aa    MW: 39061 Da    PI: 6.6488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02627genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14169215354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Ro04_G02627 169 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 215
                  79*************************9.....8****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MMCGKKEDQG ECSQSHQQVQ NFQEQLLLQQ QMMQQQQQQQ NHHDLYGRGL IFPPHDQAPP  60
PILQPWTLPP IHAFSPAHFP VRGDNNLDPF LVPPPAPSSS YASFFNRRGS PSLQFTYDGS  120
ASDHHHLRIL SEALGPMVQP GSAPFGLQAE LGKLTAQEIM DAKALAASKS HSEAERRRRE  180
RINNHLAKLR SLLPSTTKTD KASLLAEVIQ HVKELKRQTS VIAETSPVPT EMDELIVDNA  240
SDEEGKFVIK ASLCCEDRSD LLPDLIKTLK ALRLRTLKAE ITTLGGRVKN VLFITGEEDS  300
SSSEEQQQQQ YCISSIQEAL KAVMEKSGGG DESNSSGSVK RQRTTNTNIN IL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-81bHLH family protein