PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02680

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 434aa MW: 48091.2 Da PI: 5.3936

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02680	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.5	3.1e-09	24	68	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +r C+ + +k+++++C ++ +lC+ C + H+ H++v Ro04_G02680 24 ARACDSCIKKRARWYCAADDAFLCQACDSFVHSAnqlarrHNRVL 68 578*****************************6578888888775 PP
2	CCT	68.5	1.7e-23	387	430	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Ro04_G02680 387 REARVSRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 430 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MISNKKAAAS ASAAAASVVG AKTARACDSC IKKRARWYCA ADDAFLCQAC DSFVHSANQL 60 ARRHNRVLLK TASSLKSSRT TSSNNNNSQV PSWHGGFTRK ARTPRHGKSV TPRNRFPLVP 120 EVGADDVSYE ENDEEQLLYR VPVFDPFVAE LCSTSPNSNA VSTDINGNES KAVLLPNYYG 180 DNGNSSSHGF HLPSDMDLAE FAADVDSLLG RGLDDDECFG IQGLGLMDSN EKESTSTEDG 240 SSGRVKREDD DEDAYMACQA ETEIDLMRDP FVLNFEDYDD SPASCAEEEE DEDDKLGVRM 300 SLDGMKTSNE EHNNCKKRNI FLRLDYDAVI TTWDSQSKGS PWTFGDRPDF NSDCLPDWMG 360 TSSGGELLHY PLSGVVGVHP AMTDGGREAR VSRYKEKRRT RLFSKKIRYE VRKLNAEKRP 420 RMKGRFVKRA SFAA

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MISNKKAAAS ASAAAASVVG AKTARACDSC IKKRARWYCA ADDAFLCQAC DSFVHSANQL  60
ARRHNRVLLK TASSLKSSRT TSSNNNNSQV PSWHGGFTRK ARTPRHGKSV TPRNRFPLVP  120
EVGADDVSYE ENDEEQLLYR VPVFDPFVAE LCSTSPNSNA VSTDINGNES KAVLLPNYYG  180
DNGNSSSHGF HLPSDMDLAE FAADVDSLLG RGLDDDECFG IQGLGLMDSN EKESTSTEDG  240
SSGRVKREDD DEDAYMACQA ETEIDLMRDP FVLNFEDYDD SPASCAEEEE DEDDKLGVRM  300
SLDGMKTSNE EHNNCKKRNI FLRLDYDAVI TTWDSQSKGS PWTFGDRPDF NSDCLPDWMG  360
TSSGGELLHY PLSGVVGVHP AMTDGGREAR VSRYKEKRRT RLFSKKIRYE VRKLNAEKRP  420
RMKGRFVKRA SFAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	414	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-88	CO-like family protein