PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02681

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 208aa MW: 22183.2 Da PI: 8.5843

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.4	4.5e-28	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a +++r+ +++sl+yeA+ r+ +P G+vg+++++++ +q++++ Ro04_G02681 4 SCNGCRVLRKGCSDKCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAQHQRPGIFKSLLYEACGRIVNPTFGSVGLLSSGNWAQCQAAVD 101 6************************************************************************************************9 PP DUF260 94 lallkee 100 ++l++++ Ro04_G02681 102 AVLAGSP 108 9988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MRSSCNGCRV LRKGCSDKCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAQH 60 QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV DAVLAGSPIV EINAAAQQPN 120 PNPGPPFQSC DIRHVYRDAN FGKTRNRFKR SMTGPKIQLG SITEPAAGPS SSQGGQSVET 180 VEAPWVMNRG DPDPVGNIDG LELTLGLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	9e-64	LBD family protein