PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02701
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 228aa    MW: 25905.3 Da    PI: 6.7034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-08128175455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN+++  L+ l+P +     k +  a +L  ++ Y++sLq
  Ro04_G02701 128 SHSLAERVRREKINERLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 175
                  8*************************8....355888999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MELIDSLCEL ENLNANHHGI MALSTDSFTT TTPPPHHQQQ PQLPAAMSNF ITDHNSHNIP  60
RFSHSQDPND HHVLMAHPTA LTAFFGEQGE KEKPIGGRKR KRNNTDKDMD KPKEVIHVRA  120
KRGQATDSHS LAERVRREKI NERLRCLQNL VPGCYKTMGM AVMLDVVISY VQSLQNQIEF  180
LSMKLSAASV YYDFNSPGHT DVVDTMQLNI LKWDNYVYVE ADDKGEII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-50bHLH family protein