PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02731
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 351aa    MW: 39264.1 Da    PI: 8.2798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11124169454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   hn+ E+ RR++i+ ++ +L+el+P++     +  + a++L  AveY+k L
  Ro04_G02731 124 LHNKYEKERRNKIKRKMKTLQELIPNC-----TTSDRASMLDDAVEYLKAL 169
                  6*************************9.....7789999**********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MRSQVQESES TTRGEFSSLL NSLVSNPQNQ QQLQQAELSN PQNPQLQQIY DCWNSTEDES  60
FQDIFEGLSN IYQLDNILSD KKLFLSNSDE IESNGRKTKS VGTVSTEPDP KKNEQSKRIR  120
STELHNKYEK ERRNKIKRKM KTLQELIPNC TTSDRASMLD DAVEYLKALK LQVQMMSMAR  180
EAMWQTGVQS SSTQKVPQFV PYMTMGFGMG MGMVNMCDYS AGGTGLPLPL VPVPSSSTPL  240
GPRFVNPFPP FQVPPPSFMA SQAMPAATTT SSTSTMVQPQ QIPRDFSYAF NSANQGESST  300
SQYITKRAMN DNQQAPIPGE SYSSLLGNRK TKQLQADENY SHPRRTGCTA R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-22bHLH family protein