PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02768

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 706aa MW: 76345.3 Da PI: 6.0346

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02768	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.5	2.9e-13	235	296	2	63
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ kr r+++NRe+A+ sRqRKk ++eeLe+kv ++ + +L ++++ e a+lk+++ Ro04_G02768 235 EDEKRKARLMRNRESAQLSRQRKKHYVEELEDKVRAMHSTIADLNNKVSYVMAENATLKQQL 296 6789*******************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence
MEDRVVGEPP ILPPDLTPNT SNSSEDFESL PIPPLDPQFF SSDSGMTTIP SDAFLSDLGF 60 GFGSEDNCDY ELTFDDLDNL YLPSETDDFL IPDGFDPGAA ADQPSADSTS LLDSESHESG 120 SSEISREKGS DVSGFLNYPS SESGRHDQEF SENSGGALSS QGSGIPEAIN SPSHSGNSDR 180 DVSSYVTTAD EKVKMEDEMT KNGVVVAKRK KESDEGNVES RSSKYRRSES ALNDEDEKRK 240 ARLMRNRESA QLSRQRKKHY VEELEDKVRA MHSTIADLNN KVSYVMAENA TLKQQLSSGS 300 GICPPPPAPG MYPMPPMGYP WMPYSPYVMK PQGSQVPLVP IPRLKPQQPV AAPKHKKKSE 360 GKSKKVASIS FLGLLFFLLL FGGLVPMVNV NFGGSNYVRD RFSVEQRAKV LTVQGHLNGS 420 EENIPLGISG GKFDVSNKIH ERAHMQKEQG SQPLPGLGNA SEPLVASLYV PRNDKLVKID 480 GNLIIHSVLA SEKAKTHKNS REASVEGAKD LVSALAIPEA GVNRGRRAPL YRTPAGRQKA 540 LTSGSADGKL QQWFREGLAG PLLSSGMCTE VFQFDASAAT HSGGIIPASS VSNVSEHSSN 600 TTRLNRGGNR RILGGRPIPL AGSNHNVTDE ERAIRNNQSS NSIQGNSSSM VVSVLVDPRE 660 AGDIDVDGMI KPKSLSRVFV VLLLDSVKYV TYSCVLPRSA PHLVTT

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence

MEDRVVGEPP ILPPDLTPNT SNSSEDFESL PIPPLDPQFF SSDSGMTTIP SDAFLSDLGF  60
GFGSEDNCDY ELTFDDLDNL YLPSETDDFL IPDGFDPGAA ADQPSADSTS LLDSESHESG  120
SSEISREKGS DVSGFLNYPS SESGRHDQEF SENSGGALSS QGSGIPEAIN SPSHSGNSDR  180
DVSSYVTTAD EKVKMEDEMT KNGVVVAKRK KESDEGNVES RSSKYRRSES ALNDEDEKRK  240
ARLMRNRESA QLSRQRKKHY VEELEDKVRA MHSTIADLNN KVSYVMAENA TLKQQLSSGS  300
GICPPPPAPG MYPMPPMGYP WMPYSPYVMK PQGSQVPLVP IPRLKPQQPV AAPKHKKKSE  360
GKSKKVASIS FLGLLFFLLL FGGLVPMVNV NFGGSNYVRD RFSVEQRAKV LTVQGHLNGS  420
EENIPLGISG GKFDVSNKIH ERAHMQKEQG SQPLPGLGNA SEPLVASLYV PRNDKLVKID  480
GNLIIHSVLA SEKAKTHKNS REASVEGAKD LVSALAIPEA GVNRGRRAPL YRTPAGRQKA  540
LTSGSADGKL QQWFREGLAG PLLSSGMCTE VFQFDASAAT HSGGIIPASS VSNVSEHSSN  600
TTRLNRGGNR RILGGRPIPL AGSNHNVTDE ERAIRNNQSS NSIQGNSSSM VVSVLVDPRE  660
AGDIDVDGMI KPKSLSRVFV VLLLDSVKYV TYSCVLPRSA PHLVTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-136	bZIP family protein