PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02787

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 316aa MW: 36217.9 Da PI: 4.841

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02787	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	259	293	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL++rq+ +WF N+R ++ Ro04_G02787 259 KWPYPTEADKIALAESTGLDQRQINNWFINQRKRH 293 569*****************************885 PP
2	ELK	26.8	1.2e-09	213	234	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++Llr +++++g+Lk EFs Ro04_G02787 213 DLKDRLLRRFGSHIGTLKLEFS 234 69*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MEEMYGLQPT VDYSDKALMS PENLILPMDY QSLLSSGAFR DHRVPMTFGS DVADLYSVIP 60 TAPEFRRGEE DVFGFIKAKI ASHPSYPRLI EAFIDCQKVG APPEIASFLE EIRRENDLYK 120 RDRDAANVIS TCIGADPELD EFMETYCEML VKYKSDLSRP FDEATTFLNK IETQLSNLCI 180 RSLSDEGAVS SEEELSGGEL EVQEAQARGE DRDLKDRLLR RFGSHIGTLK LEFSKKKKKG 240 KLPKEARQAL LHWWSVHYKW PYPTEADKIA LAESTGLDQR QINNWFINQR KRHWRPSENM 300 QFALMDNLSG PFSADD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-114	TALE family protein