PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G06410

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 489aa MW: 51617.6 Da PI: 8.3689

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G06410	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37	5.5e-12	48	73	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG+C yG+rC+++H++ Ro04_G06410 48 DEADCSYYLRTGICGYGARCRYNHPR 73 6799********************96 PP
2	zf-CCCH	39	1.3e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Ro04_G06410 95 QPVCQYYMRTGTCKFGATCKYHHPK 119 689********************96 PP
3	zf-CCCH	36.6	7.5e-12	139	165	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H++ Ro04_G06410 139 PGERECSYYVKTGQCKFGATCKFHHPQ 165 5789*********************97 PP
4	zf-CCCH	35.8	1.3e-11	302	327	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+G++C+++H+ Ro04_G06410 302 PGQAECQYYLRTGDCKFGSSCRYHHP 327 5789*********************8 PP
5	zf-CCCH	34.4	3.7e-11	363	386	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Ro04_G06410 363 PLCTHYAQRGACKFGSACKFDHPM 386 89********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MERYGRNTDG SQADPSPEWT APGPETGLEE SMWQLSLGPG ESYPERPDEA DCSYYLRTGI 60 CGYGARCRYN HPRDRSAVTG ALRAGAVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ 120 GGGSATPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTTGI QPQVPSQAHQ 180 APIVPAPTLY QTVQSPSVSS QSYGAVMVAR PPLLPSSYFQ SPYGPMLIPP GMVPFSGWSP 240 YPAPASPLPS PSTQTAVGSG TIYGINQLSP SAPAYTGIFP TVPFSLGLPT TSQKEQSHPE 300 RPGQAECQYY LRTGDCKFGS SCRYHHPAEV VAPKTPVVLS SIGLPSRPSC CLMRSNSLAT 360 GAPLCTHYAQ RGACKFGSAC KFDHPMGTLS YSPSASSLTD MPVAPYPVGS SIGTLAPSSS 420 SSELRPELNS GTSKDSVSAR TSSSLSTVSG SVGSTVSKGG VAHLGGQQSA KGSGSSTTSD 480 NSTESRSSS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MERYGRNTDG SQADPSPEWT APGPETGLEE SMWQLSLGPG ESYPERPDEA DCSYYLRTGI  60
CGYGARCRYN HPRDRSAVTG ALRAGAVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ  120
GGGSATPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTTGI QPQVPSQAHQ  180
APIVPAPTLY QTVQSPSVSS QSYGAVMVAR PPLLPSSYFQ SPYGPMLIPP GMVPFSGWSP  240
YPAPASPLPS PSTQTAVGSG TIYGINQLSP SAPAYTGIFP TVPFSLGLPT TSQKEQSHPE  300
RPGQAECQYY LRTGDCKFGS SCRYHHPAEV VAPKTPVVLS SIGLPSRPSC CLMRSNSLAT  360
GAPLCTHYAQ RGACKFGSAC KFDHPMGTLS YSPSASSLTD MPVAPYPVGS SIGTLAPSSS  420
SSELRPELNS GTSKDSVSAR TSSSLSTVSG SVGSTVSKGG VAHLGGQQSA KGSGSSTTSD  480
NSTESRSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-148	C3H family protein