PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G06421

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YB

Protein Properties

Length: 179aa MW: 20526.1 Da PI: 7.9862

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G06421	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	161	1.7e-50	38	131	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +qd++lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kc++e+rkt+ngdd++wal+tlGf++y pl+ yl +yr+ eg+ Ro04_G06421 38 QQDQLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCRKERRKTVNGDDICWALGTLGFDEYTGPLRRYLYRYRDQEGA 131 79****************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MRHEFRLPAI KNNADPSPKH QSSNRQSKAS SAPNICDQQD QLLPIANVGR IMKQILPPNA 60 KISKEAKETM QECVSEFISF VTGEASEKCR KERRKTVNGD DICWALGTLG FDEYTGPLRR 120 YLYRYRDQEG ADHQHRAIND NEDKLKLLAN NNILGSDQAP RMMMVMNQYD HPDHDIQKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-53	NF-YB family protein