PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G07106

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 188aa MW: 21410 Da PI: 9.9174

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G07106	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.1	7.4e-33	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+ Ro04_G07106 109 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHP 167 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MGSYPTFYSS SSTPPAASSS SLSLNMVNNH PHHAYSNDQY QVSNNKSNGF LGMMSDMEVS 60 NSMSSISQSM KNFGEGESNT AVRLGMKKGE KKIRKPRYAF QTRSQVDILD DGYRWRKYGQ 120 KAVKNNKFPR SYYRCTHQGC NVKKQVQRLT KDEGVVVTTY EGMHSHPIEK STDNFEHILT 180 QMQIYTSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-60	WRKY family protein