PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G07116

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CAMTA

Protein Properties

Length: 1159aa MW: 129950 Da PI: 5.4279

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G07116	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.3	1.7e-54	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ke ++rwlk+ e++ iL+n+ek+++t e++++p sgsl+L+n++++r+fr+DG+ w+kk+dg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+y Ro04_G07116 13 KEaQTRWLKPAEVLFILQNHEKYKVTPEPPQQPVSGSLFLFNKRILRFFRRDGHRWRKKRDGRTVGEAHERLKVGNVETLNCYYAHGEDNPNFQRRSY 110 5669******************************************************************************************** PP CG-1 100 wlLeeelekivlvhyle 116 w+L+ ++e+ivlvhy+e Ro04_G07116 111 WMLDPAYEHIVLVHYRE 127 *************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence
MTQSGYNIND LFKEAQTRWL KPAEVLFILQ NHEKYKVTPE PPQQPVSGSL FLFNKRILRF 60 FRRDGHRWRK KRDGRTVGEA HERLKVGNVE TLNCYYAHGE DNPNFQRRSY WMLDPAYEHI 120 VLVHYREISE VKPSPGSLIQ SPVSSSSFSQ SPISNTTQHQ GSVSMISELY EPYQNLSSPE 180 VSSDLVIQKN GSENVEKLYS TGESDSSTKV DVSQALRRLE EQLSLNDDSF KEFVDDDPNG 240 SDILEYPSDS SNQDQFTAFH AQEPIVHDQF YSGYAQMQGN ANISTDILDY HGDIINQDQF 300 TPFPGREHIL NDQFYSGRAQ MQSNADISGE HRQFLDHEFA DGNKESVSWK EVLNSSGVEH 360 QEKRLYTLDR SGKLSSSSSR SHEGPEYTSS LLPQQVDSFK ISPYSSVIET HSDYYTSFFE 420 QEPIGHLDSD ISLTVAQKQK FTIREISPEW GYATEATKVI VIGSFMCDPS ESAWTCMFGD 480 VEVPAEIIQE GVIRCEAPPH LPGKVTICIT SGNRESCSEV REFEYRVKSS SFTPNNSPPT 540 EARSAEELLL LVRFAQILLS DSPMQRRDIV ESEFLRKSKA DDDTWGGIIE ALLVGSGSSS 600 STIYWLLEEF LKDKLEQWIS SRSLGLDQSD CSLSKKEQGM IHMIAGLGFE WALYPILNFG 660 VNINFRDING WTALHWAARF GREKMVAVLV ASGASAGAVT DPSSQDPIGK TPASIAATHG 720 HKGLAGYLSE VALTSHLSSL TLKESEISRG CAEVEAEITV NSISTSSLEA NEDQVPLKNT 780 LAAVRNAAQA AARIQSAFRA HSFRRRQHRE VGVSIDDYGI SSDDIQGLSA MSKLAFRNPR 840 DYNSAAVSIQ KKYRGWKGRK DFLALRQKVV KIQACVRGYQ VRKHYKVICW AVGILDKVVL 900 RWRRKGAGLR GFRQETESTE ESEDEDILKV FRKQKVDGAI DEAVSRVLSM VESPEAREQY 960 QRMLERYHQA KAEMGSSSTS GEAAGPSSLE ERKNKRGASG ESFFQGDDDK DDDDLLLSRL 1020 LSQLESLKDK RREEITSCEG GGELEASGGG GGEEIDKQEI VKELNKLKRQ NTITHWLLSA 1080 MLVLTIAWQA SEVTLLLKVK HGLSNPFKYC ESLISGIFSG RSEQSRQDEK HQNDAYPSLK 1140 MPELPSVELP DIGFTAEKH

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence

MTQSGYNIND LFKEAQTRWL KPAEVLFILQ NHEKYKVTPE PPQQPVSGSL FLFNKRILRF  60
FRRDGHRWRK KRDGRTVGEA HERLKVGNVE TLNCYYAHGE DNPNFQRRSY WMLDPAYEHI  120
VLVHYREISE VKPSPGSLIQ SPVSSSSFSQ SPISNTTQHQ GSVSMISELY EPYQNLSSPE  180
VSSDLVIQKN GSENVEKLYS TGESDSSTKV DVSQALRRLE EQLSLNDDSF KEFVDDDPNG  240
SDILEYPSDS SNQDQFTAFH AQEPIVHDQF YSGYAQMQGN ANISTDILDY HGDIINQDQF  300
TPFPGREHIL NDQFYSGRAQ MQSNADISGE HRQFLDHEFA DGNKESVSWK EVLNSSGVEH  360
QEKRLYTLDR SGKLSSSSSR SHEGPEYTSS LLPQQVDSFK ISPYSSVIET HSDYYTSFFE  420
QEPIGHLDSD ISLTVAQKQK FTIREISPEW GYATEATKVI VIGSFMCDPS ESAWTCMFGD  480
VEVPAEIIQE GVIRCEAPPH LPGKVTICIT SGNRESCSEV REFEYRVKSS SFTPNNSPPT  540
EARSAEELLL LVRFAQILLS DSPMQRRDIV ESEFLRKSKA DDDTWGGIIE ALLVGSGSSS  600
STIYWLLEEF LKDKLEQWIS SRSLGLDQSD CSLSKKEQGM IHMIAGLGFE WALYPILNFG  660
VNINFRDING WTALHWAARF GREKMVAVLV ASGASAGAVT DPSSQDPIGK TPASIAATHG  720
HKGLAGYLSE VALTSHLSSL TLKESEISRG CAEVEAEITV NSISTSSLEA NEDQVPLKNT  780
LAAVRNAAQA AARIQSAFRA HSFRRRQHRE VGVSIDDYGI SSDDIQGLSA MSKLAFRNPR  840
DYNSAAVSIQ KKYRGWKGRK DFLALRQKVV KIQACVRGYQ VRKHYKVICW AVGILDKVVL  900
RWRRKGAGLR GFRQETESTE ESEDEDILKV FRKQKVDGAI DEAVSRVLSM VESPEAREQY  960
QRMLERYHQA KAEMGSSSTS GEAAGPSSLE ERKNKRGASG ESFFQGDDDK DDDDLLLSRL  1020
LSQLESLKDK RREEITSCEG GGELEASGGG GGEEIDKQEI VKELNKLKRQ NTITHWLLSA  1080
MLVLTIAWQA SEVTLLLKVK HGLSNPFKYC ESLISGIFSG RSEQSRQDEK HQNDAYPSLK  1140
MPELPSVELP DIGFTAEKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein