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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Ro04_G07211 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 508aa MW: 56552.4 Da PI: 5.4746 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 367.6 | 1.7e-112 | 140 | 506 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
lv++L++cAeav+ +d++ a+alL +l+++a g+++qR+a++f +AL+ rla v+ l a+ +++++ sse+ al l +e++P ++f+h++a
Ro04_G07211 140 LVQQLISCAEAVACRDKTHASALLYELRTNAQVFGTSFQRVASCFIQALSDRLAL-VQPLG-AVGVTTKTIAVSSEKDEALDLVYEICPHIQFGHFIA 235
689***************************************************8.44444.3444444445688888999***************** PP
GRAS 99 NqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
N Ilea+eg + vH+iD++++ +G QW +L+++LasR+ ++ ++lRiTgvg+ s e+le++g+ L+ +A++++++f+f + v+++le+l+
Ro04_G07211 236 NASILEAFEGGSSVHVIDLGMTlgllHGYQWRNLMDSLASRTgQPLHRLRITGVGN----SGERLEAIGNELKLYAQSMELEFDFLA-VESNLENLKA 328
******************98753333789*************455569********....***************************.79******** PP
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
e++++ gE+l++n++lqlh l++es + +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+ ysa+fdsl+a lpr + r+k+E+++
Ro04_G07211 329 EDFNLIDGEVLIINSILQLHCLVKESRGALN---SVLHTLYELSPKLMVLVEQDSSHNGPFFLGRFMEALHNYSAIFDSLDAMLPRYDTRRAKMEQFY 423
***********************88877777...8*************************************************************** PP
GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+g+ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+ +qa l+ + +gy++ e++g++vlgWk++p+v+vS+Wr
Ro04_G07211 424 FGEEIKNIVSCEGPARVERHERVDQWRRRMRRAGFQPAPLKMI--AQATKWLEINACEGYTIVEDKGCFVLGWKSKPIVAVSCWR 506
****************************************865..5777888888888**************************8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 508 aa Download sequence |
MASGFYGQPH EIYGDNTSAE VVGLDLNLSS MSCLPFPSLS TLENNSAIWE IPFIDGTRTY 60 KRVKLELSAD ESIISTNYSL YNGSGSMHTS GFNSLPRIQF RDHISAYTRR YLAAEAMEEA 120 ASTLLGGRPE EEGSGDGMKL VQQLISCAEA VACRDKTHAS ALLYELRTNA QVFGTSFQRV 180 ASCFIQALSD RLALVQPLGA VGVTTKTIAV SSEKDEALDL VYEICPHIQF GHFIANASIL 240 EAFEGGSSVH VIDLGMTLGL LHGYQWRNLM DSLASRTGQP LHRLRITGVG NSGERLEAIG 300 NELKLYAQSM ELEFDFLAVE SNLENLKAED FNLIDGEVLI INSILQLHCL VKESRGALNS 360 VLHTLYELSP KLMVLVEQDS SHNGPFFLGR FMEALHNYSA IFDSLDAMLP RYDTRRAKME 420 QFYFGEEIKN IVSCEGPARV ERHERVDQWR RRMRRAGFQP APLKMIAQAT KWLEINACEG 480 YTIVEDKGCF VLGWKSKPIV AVSCWRCS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G03450.1 | 5e-76 | GRAS family protein | ||||




