PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G08840
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 260aa    MW: 29083.1 Da    PI: 5.3167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G08840genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.3e-09103150455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i  ++  L++l+P +    +k   Ka iL   ++Y++ Lq
  Ro04_G08840 103 SHSLAERARRAKIGMRMKLLQSLVPGC----DKITGKAHILDAIIKYVQLLQ 150
                  8*************************9....899***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MKLINTSYPL LENQPPLELS LSPSSTYTCI DLFVKHNIYQ THHFIFHGHA SVLVINPHSP  60
VEEKMEEQVN GQKQRKQKSK VAAEGVETDY VRVKARRGQA TDSHSLAERA RRAKIGMRMK  120
LLQSLVPGCD KITGKAHILD AIIKYVQLLQ NQVESLAAKL AFVDLMLFDC EPNPSANPYD  180
LEGLYHYEPP LPSLPESSSI PFMSFADAAP SDSASLLLTE DQRASLVLQD GENFLLDMDD  240
QYHGDIVYQP EAGLDNLCTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-36bHLH family protein