PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G08859
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 244aa    MW: 27458.8 Da    PI: 6.7299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G08859genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-204897255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  Ro04_G08859 48 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAAIAYDNAALKFKG 97
                 7********.**********94....45************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MSAMVSALTQ VIGTPEEDNK VQSNPSVKDE PDRSQPVQDQ ESTVRRRHYR GVRQRPWGKW  60
AAEIRDPKKA ARVWLGTFET AEDAAIAYDN AALKFKGTKA KLNFPERVQG NSSFVMQGSS  120
GTTGSSSTVS TERNLGRPAA TVSHHHPAPP LIAPSQQQQE SSSFPDLYQY AQLLQSNDVD  180
FSSNYQYPSN PFNQDYHPAF STAPQFSPST YYPSHHQQQG QQDEHGQEDQ YDNKDWNRRN  240
PSEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-29ERF family protein