PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G11404
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 144aa    MW: 16523.8 Da    PI: 7.4933
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G11404genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.51.1e-2247128182
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgy 82 
                  lppG+rF+P d elvv+yLk+k++++ l+  + i+ev++y++ P +L ++++  +e  wyfF++r+kkya+g r++r++ +gy
  Ro04_G11404  47 LPPGYRFKPFDTELVVYYLKRKIANQILPP-NRIREVELYNFSPDTLAEQYEDvDEGAWYFFTPREKKYANGARPRRSAGDGY 128
                  79*************************999.77**************96555525559*******************999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MKISFDTIPD SQRARIENCS EAAIVTNNGS DLHGGHLGSY DSFFSTLPPG YRFKPFDTEL  60
VVYYLKRKIA NQILPPNRIR EVELYNFSPD TLAEQYEDVD EGAWYFFTPR EKKYANGARP  120
RRSAGDGYIG KLLGLIRMLY IIML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-25NAC family protein