PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12429
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 159aa    MW: 17844.4 Da    PI: 8.866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12429genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-201869256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrdps +g  +r +lg+f+taeeAa+a+++a+ +l+g+
  Ro04_G12429 18 RYRGVRRRP-WGKFAAEIRDPSRQG--ARQWLGTFDTAEEAARAYDRAAFNLRGH 69
                 6********.**********96543..**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MEDSRKGKEE KTGREEVRYR GVRRRPWGKF AAEIRDPSRQ GARQWLGTFD TAEEAARAYD  60
RAAFNLRGHL AILNFPNEYY SRVMGSPPHP PRFQSSFSSS SSSSSSSSAA ATASSTAGGS  120
FERGSSSSAG QRTQVFEFEY LDDKVLEDLL DWEEEKRSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-33ERF family protein