PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12436
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 225aa    MW: 25337.8 Da    PI: 6.1556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12436genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-0971118454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  a+  rE+ RR+r+N++f  L  +l +    +  K +K +iL  A++ + +L
  Ro04_G12436  71 AKACREKLRRERLNDKFIDLSAVLEPG---RPAKTDKPAILDDAIRVLTQL 118
                  6778**********************8...89**************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MDAMEGMEDF FGYSSLIDET QFPNFLWSNP TPSFAEIEFS ANSGVAAASQ TQEKECPRKR  60
GRTESWCGSG AKACREKLRR ERLNDKFIDL SAVLEPGRPA KTDKPAILDD AIRVLTQLRA  120
ETQELTQTNE KLLEEIKSLK AEKNELREEK VVLKTDKERL EQQLKAMTIP PTGFMPAHPA  180
VPAAYHPGAS KMAVYPSYGM IPMWHYLPPS TRDTSRDHEL RPPAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763PRKRGRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.24e-79bHLH family protein