PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12461
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 177aa    MW: 20356 Da    PI: 6.6774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143153123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  Ro04_G12461 31 YECTFCKRGFTNAQALGGHMNIH 53
                 99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MESWTVPLSP ETSSEEEKDR DDNSGTAKRS YECTFCKRGF TNAQALGGHM NIHRKDRAKA  60
KQLSNQYRSN EDYISMSASQ FSAPIYTQPA SGYYPVLGHH EHHSQRNYHQ TYYQPSGSSP  120
RFYGSTDDDS RSSQSHQDIW GANLSLRFSP TRRVDDDDFR MGVRNHEEVD LELRLGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-18C2H2 family protein