PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12462
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 226aa    MW: 25197.1 Da    PI: 6.5046
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12462genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-055173123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  Ro04_G12462 51 YTCSFCKREFKSAQALGGHMNVH 73
                 9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MERNTSFCNR FVKDHNTVMT RAIDGDSTND KKNIEDDEDY MNGYPWPPRS YTCSFCKREF  60
KSAQALGGHM NVHRKDRARL RSSPPTDFIG QYTTGTTLNL NLKPNPNPNF TSSPPPSSPP  120
FSSVSTRQLP TLTSSSLPSW ISPPSHPPPP TFSSPSYTCH SENMKWVVGG TLFGPSLNLE  180
TLDFSTQMTI NAKSQEDGCM RLDLEIGVLD GHSKDDIDLE LRLGYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-25C2H2 family protein