PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G12636

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 1092aa MW: 120820 Da PI: 7.1372

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G12636	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.8	7.4e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F ++++++l Ro04_G12636 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAVLFI--RDEKQQL 230 99***************************9445444.38********************************************..5688889 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Ro04_G12636 231 LLGIRRA 237 **997 PP
2	Auxin_resp	118.9	3.9e-39	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ Ro04_G12636 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 345 79*****************************99779******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence
MKQPANGPGV SSASAAPNSG EGGENVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE 60 QVAASMKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKDALL 120 RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDAV LFIRDEKQQL LLGIRRANRQ 240 PANLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVCANQ 300 ISLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGERRNRV 360 SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDESSDLDN LFKRTMPWLG DDMCMKDPQV 420 LPGLSLVQWM NMQQNSSVAS SMQPNYMHPS FSGSALQNLG GVDLSRQMGL SAPQIPQSNN 480 LQFNAQRLPQ QVQQLDQLPK MQSTMNPLAS MVQRQQQLGD MTQLPRQNLV NQTLPSSQAQ 540 SQLLQPQSLA QTNSILQQQS SSQNQLQRNL PQNLQQHQQQ QQQQQQQQQQ QHQQQNVVQN 600 QQQNFIQTQL PDQMNQQLQH LSDNQLQLQL LQKLQQHQQS FLAQQALQQQ PTQHLGLQDQ 660 QRQLLDVSQS FTRPSTPSQM QDLPQSAPIS HPQSRAMPQQ MTLNNNSQTN CRFTHPPQQS 720 KLQQQQPSML VEMSGQMGLP PTTTTNQLSR AGSGIMAGIA GAGQSGLTDE VPSCSTSPST 780 NNCSTVIQPL MNNRAHRNSL IGEDMAQSAT MVISSSASET MPSNGNLVKG FQHKSEVKPS 840 VNIARNHSQG MLTPQTYLNG AAAQTDYLDT SSSTTSAGLS QNDVHLQHNN PPLTFNPQSM 900 LFREASQEVE VQLDQRNNVS YGSNIDGLLG IPLNSDPLLE KGMVGLGKDF SNNLSSGVML 960 GNYENSKDAQ QELSSSMVSQ SFGVPETTFD STINDSSFLD SAPWAPAAQF QRMRTYTKVY 1020 KRGAVGRSID ITRYSGYDEL KHDLARREFV NCVRCIKILS PQEVQQMSLD GDFGGNAVLP 1080 NQACSSSDGG NA

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence

MKQPANGPGV SSASAAPNSG EGGENVKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKDALL  120
RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDAV LFIRDEKQQL LLGIRRANRQ  240
PANLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVCANQ  300
ISLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDESSDLDN LFKRTMPWLG DDMCMKDPQV  420
LPGLSLVQWM NMQQNSSVAS SMQPNYMHPS FSGSALQNLG GVDLSRQMGL SAPQIPQSNN  480
LQFNAQRLPQ QVQQLDQLPK MQSTMNPLAS MVQRQQQLGD MTQLPRQNLV NQTLPSSQAQ  540
SQLLQPQSLA QTNSILQQQS SSQNQLQRNL PQNLQQHQQQ QQQQQQQQQQ QHQQQNVVQN  600
QQQNFIQTQL PDQMNQQLQH LSDNQLQLQL LQKLQQHQQS FLAQQALQQQ PTQHLGLQDQ  660
QRQLLDVSQS FTRPSTPSQM QDLPQSAPIS HPQSRAMPQQ MTLNNNSQTN CRFTHPPQQS  720
KLQQQQPSML VEMSGQMGLP PTTTTNQLSR AGSGIMAGIA GAGQSGLTDE VPSCSTSPST  780
NNCSTVIQPL MNNRAHRNSL IGEDMAQSAT MVISSSASET MPSNGNLVKG FQHKSEVKPS  840
VNIARNHSQG MLTPQTYLNG AAAQTDYLDT SSSTTSAGLS QNDVHLQHNN PPLTFNPQSM  900
LFREASQEVE VQLDQRNNVS YGSNIDGLLG IPLNSDPLLE KGMVGLGKDF SNNLSSGVML  960
GNYENSKDAQ QELSSSMVSQ SFGVPETTFD STINDSSFLD SAPWAPAAQF QRMRTYTKVY  1020
KRGAVGRSID ITRYSGYDEL KHDLARREFV NCVRCIKILS PQEVQQMSLD GDFGGNAVLP  1080
NQACSSSDGG NA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein