PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G12651

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 183aa MW: 20908.1 Da PI: 9.4654

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G12651	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.4	1.6e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k++rqvtfskRr g++KKA ELSvLC++ev +++fs +g+lye++s Ro04_G12651 9 KRIEDKIRRQVTFSKRRSGLIKKARELSVLCGVEVGLVVFSAKGRLYEFCS 59 79***********************************************96 PP
2	K-box	44	9.5e-16	98	169	27	98
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++L+ q l +++e+L++ eL +Le+qL+ l++iRs+K++l++e + l +kek+l eenk+Lr+k Ro04_G12651 98 ANKSLKMIQSELEAQNIENLDVTELTELETQLDALLRQIRSRKTQLMMETVTALIEKEKKLIEENKYLREKE 169 57788888888999*******************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MGRGKVQLKR IEDKIRRQVT FSKRRSGLIK KARELSVLCG VEVGLVVFSA KGRLYEFCSG 60 DSLGNVLERY QIHNEEEVAN PKNGKKHHLE SSGNGTGANK SLKMIQSELE AQNIENLDVT 120 ELTELETQLD ALLRQIRSRK TQLMMETVTA LIEKEKKLIE ENKYLREKEE PHCSTFISFV 180 AFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30260.1	3e-41	MIKC_MADS family protein