PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12917
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 232aa    MW: 26341.4 Da    PI: 7.7967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12917genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.1e-131502292197
                  HH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
           B3  21 kfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                  +f+++h         s+++ l+ ++g++W  k+++  +  + +  l +GW +F+  ngL++gD +v++l+++    +++v++f
  Ro04_G12917 150 HFVNQHicgV---GDSRKVNLQIPNGKTWPAKCSVflSSDKIHAKLYRGWTKFAAKNGLQVGDACVLELIKEcPIITFLVHIF 229
                  6777777532...35679***************995555555599************************99877777777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MASPGFFKAV LDEDLEDGKL EIEGYVAVNC KDFLRHSIVL TVPNGAVWPM ELKMINGSVW  60
FTKGWLEFAN FYSLEQGFYI FLTHEGVDSC FRVRIFNKSS LEIDYPFKSS QPEFSEGDYD  120
AFTRAKRFKS NHPCLAVKIQ PSLITRMNGH FVNQHICGVG DSRKVNLQIP NGKTWPAKCS  180
VFLSSDKIHA KLYRGWTKFA AKNGLQVGDA CVLELIKECP IITFLVHIFI DN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-17B3 family protein