PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G13291
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 379aa    MW: 40332.9 Da    PI: 8.8919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G13291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11291336655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Ro04_G13291 291 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 336
                  689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MYPSSSSSSP QKPMGPSPSP TSLTRYGSAP GSLLTSAVDS VIGAVAEREF RPQPPASFIG  60
RYFSSGDGDS SSLTSESTFK VNSSKETAKP LLRSYGLGEM AAAAIGSSSS SSTSTTSCSS  120
SAALVRQRSS PAGFLSHHLT DSNGGFSVTR GTGSYNSQGG PNGGHGVTRL KSQLSFTRQD  180
SLSQISEVSE NAVEGCSNNG HHNAMHSYPA TSFGMDSWDN TNSIVFSAPP SKRAKNMDGD  240
IFNCLNTLES QFSLPQTTLE MATVEKLLHI PEDSVPCKIR AKRGCATHPR SIAERERRTR  300
ISGKLKKLQD LVPNMDKQTS YADMLDLAVQ HIKGLQNQVQ VNPLGTRLLF SPYSTSSPGH  360
KNLHKDLEGC TCGCKQPPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.18e-96bHLH family protein