PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G13294
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 82aa    MW: 9347.5 Da    PI: 5.6174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G13294genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-0715541554
                 HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 +i++   +L+ llP+ + + +++ +s ++iLe+++ YIk L
  Ro04_G13294 15 EIKELVVKLQALLPQfN-HRRNTTVSASTILEETCSYIKRL 54
                 67888889*******55.999******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    
MSSQRTRASQ PTENEIKELV VKLQALLPQF NHRRNTTVSA STILEETCSY IKRLHKEVGD  60
LSQRLSQLLH DSADIAEVDE EL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.11e-20bHLH family protein