PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G13335

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 760aa MW: 87853.8 Da PI: 7.9901

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G13335	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.3e-21	58	144	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY eY+k +GF +k + ++sk + e ++++f C+++g++++++ r++r+ +++Cka+l++k+++ dgkw v+++++eHnHel+p Ro04_G13335 58 SFYLEYGKITGFAASKIACRRSKATLEWVEAKFACTRYGTKRKTDA-----RNPRPCMKIDCKAMLHIKRSRqDGKWLVENFVKEHNHELSP 144 59***********************************9998765.....5**************999***************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
MGLHIDLNLA AEDDDNYNKD GRGEEYGDSN GNESSINTKK HSEPYVGMEF DSDLSAYSFY 60 LEYGKITGFA ASKIACRRSK ATLEWVEAKF ACTRYGTKRK TDARNPRPCM KIDCKAMLHI 120 KRSRQDGKWL VENFVKEHNH ELSPENVHYF PCYRKIAAGD QHNISTLHSV GVKASKIFAA 180 LAKQCGGYQN IGFLEKDMRN LLDKKRRLEL ESGDAKAMLE LFTSMQQANP DFFYAVDLDE 240 EHRLRNVFWV DAKGREDYKI FGDVISFDTT YITNKYKMPF APFIGVNNHF QSTLLGCALL 300 ADETTSTFVW LMETWVRAMG GRASDAILTD QDQAMKAAIA KVFPNARHRF CLWHILRKLP 360 EKLGHVLREN ENFMDVFNDC IYHSWTEEDF EKKWQHMVEI FNLDEDNWLR SLFTDRKHWV 420 PTYMRGTFFA GMSTTQRSES INSFFDKYVN KKTSLKEFVE QYKEAVRDRL EVEIHADFNN 480 LHKMPSLKSP SPFAYQMSKI YTLEIFKKFE KEVLGVSACN TINHKEDLVT MTFRVTDFAK 540 KEEFVVVVDG NKGDVSCLCR LFEYKGFLCR HAMAVLQNFG IFSIPNHYIL KRWRKYAKTG 600 HTTREMTKVA DPKKQRFNDL FAKARKLCEE GSLCDQRYDV ANRLLDEALR QCGNIIPSLN 660 VNNIDEENVN TNVPCDINVL DPKVSSTKGA PKRIKSGVEI SSRKYNKKPK QAQENLGPSK 720 DRTINSLQKI HEKLGDESYE NTEECLQDTE YTWHAMNGKG

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

MGLHIDLNLA AEDDDNYNKD GRGEEYGDSN GNESSINTKK HSEPYVGMEF DSDLSAYSFY  60
LEYGKITGFA ASKIACRRSK ATLEWVEAKF ACTRYGTKRK TDARNPRPCM KIDCKAMLHI  120
KRSRQDGKWL VENFVKEHNH ELSPENVHYF PCYRKIAAGD QHNISTLHSV GVKASKIFAA  180
LAKQCGGYQN IGFLEKDMRN LLDKKRRLEL ESGDAKAMLE LFTSMQQANP DFFYAVDLDE  240
EHRLRNVFWV DAKGREDYKI FGDVISFDTT YITNKYKMPF APFIGVNNHF QSTLLGCALL  300
ADETTSTFVW LMETWVRAMG GRASDAILTD QDQAMKAAIA KVFPNARHRF CLWHILRKLP  360
EKLGHVLREN ENFMDVFNDC IYHSWTEEDF EKKWQHMVEI FNLDEDNWLR SLFTDRKHWV  420
PTYMRGTFFA GMSTTQRSES INSFFDKYVN KKTSLKEFVE QYKEAVRDRL EVEIHADFNN  480
LHKMPSLKSP SPFAYQMSKI YTLEIFKKFE KEVLGVSACN TINHKEDLVT MTFRVTDFAK  540
KEEFVVVVDG NKGDVSCLCR LFEYKGFLCR HAMAVLQNFG IFSIPNHYIL KRWRKYAKTG  600
HTTREMTKVA DPKKQRFNDL FAKARKLCEE GSLCDQRYDV ANRLLDEALR QCGNIIPSLN  660
VNNIDEENVN TNVPCDINVL DPKVSSTKGA PKRIKSGVEI SSRKYNKKPK QAQENLGPSK  720
DRTINSLQKI HEKLGDESYE NTEECLQDTE YTWHAMNGKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein