PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G15166

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 539aa MW: 60405.2 Da PI: 4.3073

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G15166	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	260	307	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 rW++eE++ ++++v + Wk ++ ++ R+ +++s+++++ Ro04_G15166 260 RWSEEEEQAFLEVVYSNPASlgrkFWKHLSAVFP-SRSKRELVSYYFNV 307 9***********8777667777******.*********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MGFKRPFDDV DFQELPYKHS RQLEFSDKHT PFSDVVSCYS SPRKPYVSGE DGDTLCKSQW 60 LEVLEKYNVG KDLTSVNKGC VINAPSTLVN TSCGEENVGS GRDASSPPAE YFEYDCPRRA 120 FVPFKDDYSS LLDRSPRKQV PVGPNHQASI PSWNGRTKKL DQEDGGNLNR FTLHSIADND 180 SEEKLLGTTV IPMPDVNLSP PECDKVGLGR TNCSCLDPGT YRCVQQHVME AREELRRTLG 240 NEKFVKLGFC DMGEEVVARR WSEEEEQAFL EVVYSNPASL GRKFWKHLSA VFPSRSKREL 300 VSYYFNVFML RRRATQNRSN TLEIDSDDDE WHGSYGGSNG GIVSEDDEDS VIDSLEDAQA 360 VGHREEYSEE DDSDADDSDD DVGYGEDDGM DHIGVSYRMK SVDEGKYHNL VQNGEKIPGC 420 SEEEFGYQDD SCVSFEFQPD MHDSCGQMVA EPAGGALQAT GFKDERSKGL HSQHDSSSDA 480 VGHGYLLEPC DAKVWDARFP MDPMKGVDLL PTWSMIEDIF DQGMVDYEMR DDQKAPASG

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MGFKRPFDDV DFQELPYKHS RQLEFSDKHT PFSDVVSCYS SPRKPYVSGE DGDTLCKSQW  60
LEVLEKYNVG KDLTSVNKGC VINAPSTLVN TSCGEENVGS GRDASSPPAE YFEYDCPRRA  120
FVPFKDDYSS LLDRSPRKQV PVGPNHQASI PSWNGRTKKL DQEDGGNLNR FTLHSIADND  180
SEEKLLGTTV IPMPDVNLSP PECDKVGLGR TNCSCLDPGT YRCVQQHVME AREELRRTLG  240
NEKFVKLGFC DMGEEVVARR WSEEEEQAFL EVVYSNPASL GRKFWKHLSA VFPSRSKREL  300
VSYYFNVFML RRRATQNRSN TLEIDSDDDE WHGSYGGSNG GIVSEDDEDS VIDSLEDAQA  360
VGHREEYSEE DDSDADDSDD DVGYGEDDGM DHIGVSYRMK SVDEGKYHNL VQNGEKIPGC  420
SEEEFGYQDD SCVSFEFQPD MHDSCGQMVA EPAGGALQAT GFKDERSKGL HSQHDSSSDA  480
VGHGYLLEPC DAKVWDARFP MDPMKGVDLL PTWSMIEDIF DQGMVDYEMR DDQKAPASG