PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G15214
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family YABBY
Protein Properties Length: 188aa    MW: 20817.5 Da    PI: 8.7625
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G15214genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1731.9e-5391671165
        YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsl..lsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                  +d+++ se++Cyv+CnfCnt+lav +P + ++ +vtv+CGhC++l  ls   ++  +l++a ++ + +       +l   +++++    + +s+s+s 
  Ro04_G15214   9 MDLVQPSEHLCYVRCNFCNTVLAVGLPCKRMMDTVTVKCGHCSNLsfLSTRPNNPIHLQPAPHQCQIDDY---PTTLTL-HQSFSNDSRRGHSSSSSS 102
                  578999*************************************984456566666699999887444333...333333.445555555666666666 PP

        YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                  ++++    e+ ++p++p v +PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +P 
  Ro04_G15214 103 PTSM----ESPSSPKAPFVCKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYPS 167
                  6644....5677899999*************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MNLEDKVTMD LVQPSEHLCY VRCNFCNTVL AVGLPCKRMM DTVTVKCGHC SNLSFLSTRP  60
NNPIHLQPAP HQCQIDDYPT TLTLHQSFSN DSRRGHSSSS SSPTSMESPS SPKAPFVCKP  120
PEKKHRLPSA YNRFMKEEIQ RIKAANPEIP HREAFSAAAK NWARYPSPSA AAASDSGSSN  180
NVNKERTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.19e-56YABBY family protein